{UTF-8} "V(max)"= k2*Total Enzyme ~ ~ | Total Enzyme= Enzyme+ES complex ~ ~ ~ :SUPPLEMENTARY | Km= ("k-1"+k2)/(k1+1e-016) ~ ~ +0.0000000000000001 is to prevent division by zero!!!!!!! | Enzyme= INTEG ( rate 1b ES+rate 2 ES-rate 1 E, 0.2) ~ ~ | ES complex= INTEG ( rate 1 E-rate 1b ES-rate 2 ES, 0) ~ ~ | ES complex 2= INTEG ( rate 1 S-rate 1b ES2-rate 2 ES2, 0) ~ ~ | "k-1"= 0.01 ~ [0,0.5,0.01] ~ | k1= 0.01 ~ [0,1,0.01] ~ | k2= 0.01 ~ [0,1,0.01] ~ | Product= INTEG ( rate 2 ES2, 0) ~ ~ | rate 1 E= k1*Enzyme*Substrate ~ ~ | rate 1 S= k1*Enzyme*Substrate ~ ~ | rate 1b ES= "k-1"*ES complex ~ ~ | rate 1b ES2= "k-1"*ES complex 2 ~ ~ | rate 2 ES= k2*ES complex ~ ~ | rate 2 ES2= k2*ES complex 2 ~ ~ | Substrate= INTEG ( rate 1b ES2-rate 1 S, 1) ~ ~ | ******************************************************** .Control ********************************************************~ Simulation Control Parameters | FINAL TIME = 30 ~ Second ~ The final time for the simulation. | INITIAL TIME = 0 ~ Second ~ The initial time for the simulation. | SAVEPER = TIME STEP ~ Second [0,?] ~ The frequency with which output is stored. | TIME STEP = 0.125 ~ Second [0,?] ~ The time step for the simulation. | \\\---/// Sketch information - do not modify anything except names V300 Do not put anything below this section - it will be ignored *View 1 $192-192-192,0,Times New Roman|12||0-0-0|0-0-0|0-0-255|-1--1--1|-1--1--1|96,96,100,0 10,1,Enzyme,204,215,40,20,3,3,0,0,0,0,0,0 10,2,ES complex,480,386,40,20,3,3,0,0,0,0,0,0 10,3,ES complex 2,480,515,40,20,3,3,0,0,0,0,0,0 10,4,Substrate,199,628,40,20,3,3,0,0,0,0,0,0 10,5,Product,750,515,40,20,3,3,0,0,0,0,0,0 1,6,8,2,4,0,0,22,0,0,0,-1--1--1,,1|(476,294)| 1,7,8,1,100,0,0,22,0,0,0,-1--1--1,,1|(357,215)| 11,8,460,476,215,6,8,34,3,0,0,3,0,0,0 10,9,rate 1 E,476,196,28,11,40,3,0,0,-1,0,0,0 1,10,12,1,4,0,0,22,0,0,0,-1--1--1,,1|(204,306)| 1,11,12,2,100,0,0,22,0,0,0,-1--1--1,,1|(325,386)| 11,12,380,204,386,6,8,34,3,0,0,1,0,0,0 10,13,rate 1b ES,204,405,35,11,40,3,0,0,-1,0,0,0 1,14,16,1,4,0,0,22,0,0,0,-1--1--1,,1|(205,147)| 1,15,16,2,100,0,0,22,0,0,0,-1--1--1,,4|(732,92)|(732,92)|(732,386)|(626,386)| 11,16,348,205,92,6,8,34,3,0,0,3,0,0,0 10,17,rate 2 ES,205,73,35,11,40,3,0,0,-1,0,0,0 1,18,20,3,4,0,0,22,0,0,0,-1--1--1,,1|(322,515)| 1,19,20,4,100,0,0,22,0,0,0,-1--1--1,,1|(199,565)| 11,20,364,199,515,6,8,34,3,0,0,3,0,0,0 10,21,rate 1 S,199,496,28,11,40,3,0,0,-1,0,0,0 1,22,24,4,4,0,0,22,0,0,0,-1--1--1,,1|(356,627)| 1,23,24,3,100,0,0,22,0,0,0,-1--1--1,,1|(480,577)| 11,24,412,480,627,6,8,34,3,0,0,1,0,0,0 10,25,rate 1b ES2,480,646,41,11,40,3,0,0,-1,0,0,0 1,26,28,5,4,0,0,22,0,0,0,-1--1--1,,1|(665,515)| 1,27,28,3,100,0,0,22,0,0,0,-1--1--1,,1|(564,515)| 11,28,428,615,515,6,8,34,3,0,0,1,0,0,0 10,29,rate 2 ES2,615,534,39,11,40,3,0,0,-1,0,0,0 10,30,k1,52,348,20,20,2,3,0,0,1,0,0,0 10,31,"k-1",52,443,20,20,2,3,0,0,1,0,0,0 10,32,k2,857,424,20,20,2,3,0,0,1,0,0,0 1,33,2,16,1,0,0,0,0,64,0,-1--1--1,,1|(538,170)| 1,34,32,16,1,0,0,0,0,64,0,-1--1--1,,1|(677,147)| 1,35,3,29,1,0,0,0,0,64,0,-1--1--1,,1|(538,563)| 1,36,32,29,1,0,0,0,0,64,0,-1--1--1,,1|(790,570)| 1,37,3,25,1,0,0,0,0,64,0,-1--1--1,,1|(387,580)| 1,38,4,20,1,0,0,0,0,64,0,-1--1--1,,1|(135,547)| 1,39,1,20,1,0,0,0,0,64,0,-1--1--1,,1|(111,408)| 1,40,1,8,1,0,0,0,0,64,0,-1--1--1,,1|(361,165)| 1,41,4,8,1,0,0,0,0,64,0,-1--1--1,,1|(8,310)| 1,42,30,8,0,0,0,0,0,64,0,-1--1--1,,1|(263,281)| 1,43,30,20,1,0,0,0,0,64,0,-1--1--1,,1|(98,451)| 1,44,31,24,1,0,0,0,0,64,0,-1--1--1,,1|(143,712)| 1,45,31,13,0,0,0,0,0,64,0,-1--1--1,,1|(114,427)| 1,46,2,13,1,0,0,0,0,64,0,-1--1--1,,1|(338,438)| 12,47,157484408,811,760,259,178,3,188,0,0,1,0,0,0 conc. 10,48,Total Enzyme,620,450,20,20,2,3,0,0,1,0,0,0 1,49,1,48,0,0,0,0,0,64,0,-1--1--1,,1|(414,334)| 1,50,2,48,0,0,0,0,0,64,0,-1--1--1,,1|(554,419)| 10,51,Km,830,123,20,20,2,3,0,0,1,0,0,0 1,52,30,51,0,0,0,0,0,64,0,-1--1--1,,1|(433,237)| 1,53,31,51,0,0,0,0,0,64,0,-1--1--1,,1|(434,285)| 1,54,32,51,0,0,0,0,0,64,0,-1--1--1,,1|(844,280)| 10,55,"V(max)",740,435,20,20,2,3,0,0,1,0,0,0 1,56,48,55,0,0,0,0,0,64,0,-1--1--1,,1|(672,443)| 1,57,32,55,0,0,0,0,0,64,0,-1--1--1,,1|(805,428)| \\\---/// Sketch information - do not modify anything except names V300 Do not put anything below this section - it will be ignored *View 2 $192-192-192,0,Comic Sans MS|12||0-0-255|0-0-0|0-0-255|-1--1--1|-1--1--1|96,96,5,0 12,1,470156726,778,518,437,313,3,188,0,0,1,0,0,0 conc. 12,2,16778884,448,879,109,37,3,252,0,0,0,0,0,0 k1,0,1,0.01 12,3,158467448,668,878,108,38,3,252,0,0,0,0,0,0 "k-1",0,0.5,0.01 12,4,12126108,890,879,105,38,3,252,0,0,0,0,0,0 k2,0,1,0.01 12,5,114952112,1110,877,109,38,3,252,0,0,0,0,0,0 TIME STEP,0,1,0.01 12,6,0,535,182,59,13,8,132,0,46,-1,0,0,0,0-0-0,0-0-255,Comic Sans MS|14||255-255-255 substrate, S 12,7,0,679,182,49,13,8,132,0,46,-1,0,0,0,0-0-0,255-0-0,Comic Sans MS|14||255-255-255 enzyme, E 12,8,0,852,183,72,13,8,132,0,46,-1,0,0,0,0-0-0,0-128-0,Comic Sans MS|14||255-255-255 ES complex, ES 12,9,0,1012,182,49,13,8,132,0,46,-1,0,0,0,0-0-0,128-128-128,Comic Sans MS|14||255-255-255 product, P 12,10,0,763,30,189,36,8,132,0,58,-1,0,0,0,0-0-0,0-0-0,Comic Sans MS|30|B|0-128-0 Enzyme Kinetics 12,11,0,760,112,297,40,8,132,0,42,-1,0,0,0,0-0-0,0-0-0,Comic Sans MS|24||128-64-0 S + E < ---> ES ---> P + E 12,12,0,682,97,10,11,8,4,0,0,-1,0,0,0 k1 12,13,0,688,134,13,11,8,4,0,0,-1,0,0,0 k-1 12,14,0,854,93,13,8,8,132,0,0,-1,0,0,0 k2 12,15,0,276,432,50,15,8,132,0,8,2,0,0,0,0-0-0,0-0-0,|18||0-0-0 (S)o = 1 12,16,0,186,502,75,16,8,4,0,10,-1,0,0,0,0-0-0,0-0-0,|18||255-0-0 (E)o = 0.2 ///---\\\ :GRAPH conc. :TITLE Concentrations for Enzyme Reaction :X-AXIS Time :SCALE :VAR Substrate|Substrate :Y-MIN 0 :Y-MAX 1 :LINE-WIDTH 3 :VAR Enzyme|Enzyme :Y-MIN 0 :Y-MAX 1 :LINE-WIDTH 3 :VAR ES complex|ES complex :Y-MIN 0 :Y-MAX 1 :LINE-WIDTH 3 :VAR Product|Product :Y-MIN 0 :Y-MAX 1 :LINE-WIDTH 3 :VAR Total Enzyme|Total enzyme :Y-MIN 0 :Y-MAX 1 :LINE-WIDTH 1 :TABLE table :TITLE table :PRETTYNUM :TIME-DOWN :FIRST-CELLWIDTH 30 :CELLWIDTH 14 :FONT Times New Roman|12||0-0-0 :VAR ES complex :VAR ES complex 2 :TABLE GRAPH :TITLE GRAPH :PRETTYNUM :TIME-DOWN :FIRST-CELLWIDTH 30 :CELLWIDTH 14 :FONT Times New Roman|12||0-0-0 :VAR Km :VAR "V(max)" :L<%^E!@ 9:Current 23:0 15:0,0,0,1,0,0 19:5,1 27:2, 34:0, 4:Time 5:ES complex 24:0 25:30 26:30